PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG033500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 250aa    MW: 27041.7 Da    PI: 5.7543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG033500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-1082130354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  Pavir.6NG033500.1.p  82 TSKACREKMRRDKLNDRFLELGSTLEPG---KPVKADKAAILSDATRMVIQL 130
                          67889**********************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1376149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.1779130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-880135No hitNo description
PfamPF000102.0E-782130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1282153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-985136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSLPPAPAES GGGGGSPGDD WFLDCGILDD LPAAACGAFP WDASPSSSNP SVEVGSYVNT  60
GDVFKEPGSN KRLRSGSSGR PTSKACREKM RRDKLNDRFL ELGSTLEPGK PVKADKAAIL  120
SDATRMVIQL RSEAQQLKDT NGSLEEKIKE LKAEKDELRD EKQKLKLEKE SLEHQMKLMT  180
STPAYMPHPT LMPAPFPQAQ LAPFHPHAQA AGQKLMMPFV GYPGYPMWQF MPPSEVDTSK  240
DSEACPPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.53670.0callus| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986900.0FP098690.1 Phyllostachys edulis cDNA clone: bphyem125l05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972892.11e-163PREDICTED: transcription factor ILR3
SwissprotQ9FH377e-73ILR3_ARATH; Transcription factor ILR3
TrEMBLK3YJC01e-163K3YJC0_SETIT; Uncharacterized protein
STRINGSi014339m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-49bHLH family protein